{
  "_id": "6a1d62cd1d7bb097a0a4b1ea",
  "Package": "Rpadrino",
  "Title": "Interact with the 'PADRINO' IPM Database",
  "Version": "0.0.5",
  "Authors@R": "c(\nperson(given = \"Sam\",\nfamily = \"Levin\",\nrole = c(\"aut\", \"cre\"),\nemail = \"levisc8@gmail.com\",\ncomment = c(ORCID = \"0000-0002-3289-9925\")),\nperson(given = \"Aldo\",\nfamily = \"Compagnoni\",\nemail = \"aldo.compagnoni@idiv.de\",\nrole = \"aut\"),\nperson(given = \"Dylan\",\nfamily = \"Childs\",\nemail = \"d.childs@sheffield.ac.uk\",\nrole = \"aut\"),\nperson(given = \"Sanne\",\nfamily = \"Evers\",\nemail = \"sanne.evers@idiv.de\",\nrole = \"aut\"),\nperson(given = \"Tomos\",\nfamily = \"Potter\",\nemail = \"tomos.potter@zoo.ox.ac.uk\",\nrole = \"aut\"),\nperson(given = \"Roberto\",\nfamily = \"Salguero-Gomez\",\nemail = \"rob.salguero@zoo.ox.ac.uk\",\nrole = \"aut\"),\nperson(given = \"Tiffany\",\nfamily = \"Knight\",\nemail = \"tiffany.knight@idiv.de\",\nrole = \"aut\"))",
  "Description": "'PADRINO' houses textual representations of Integral\nProjection Models which can be converted from their table\nformat into full kernels to reproduce or extend an already\npublished analysis. 'Rpadrino' is an R interface to this\ndatabase. For more information on Integral Projection Models,\nsee Easterling et al. (2000)\n<doi:10.1890/0012-9658(2000)081[0694:SSSAAN]2.0.CO;2>, Merow et\nal. (2013) <doi:10.1111/2041-210X.12146>, Rees et al. (2014)\n<doi:10.1111/1365-2656.12178>, and Metcalf et al. (2015)\n<doi:10.1111/2041-210X.12405>. See Levin et al. (2021) for more\ninformation on 'ipmr', the engine that powers model\nreconstruction <doi:10.1111/2041-210X.13683>.",
  "SystemRequirements": "libcurl: libcurl-devel (rpm) or\nlibcurl4-openssl-dev (deb).",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "BugReports": "https://github.com/padrinoDB/Rpadrino/issues",
  "URL": "https://github.com/padrinoDB/Rpadrino,\nhttps://padrinoDB.github.io/Rpadrino/",
  "RoxygenNote": "7.2.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/parallel": "true",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev",
  "Repository": "https://padrinodb.r-universe.dev",
  "Date/Publication": "2023-09-22 20:07:24 UTC",
  "RemoteUrl": "https://github.com/padrinodb/rpadrino",
  "RemoteRef": "HEAD",
  "RemoteSha": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-01 10:26:20 UTC",
    "User": "root"
  },
  "Author": "Sam Levin [aut, cre] (ORCID: <https://orcid.org/0000-0002-3289-9925>),\nAldo Compagnoni [aut],\nDylan Childs [aut],\nSanne Evers [aut],\nTomos Potter [aut],\nRoberto Salguero-Gomez [aut],\nTiffany Knight [aut]",
  "Maintainer": "Sam Levin <levisc8@gmail.com>",
  "MD5sum": "5a64a6f31730d160ff9e9ce961d2f4d4",
  "_user": "padrinodb",
  "_type": "src",
  "_file": "Rpadrino_0.0.5.tar.gz",
  "_fileid": "ac5b8cb7d1e9cb84345803de447f5546f51f4960138efe68d9dede433ae61be2",
  "_filesize": 1027786,
  "_sha256": "ac5b8cb7d1e9cb84345803de447f5546f51f4960138efe68d9dede433ae61be2",
  "_created": "2026-06-01T10:26:20.000Z",
  "_published": "2026-06-01T10:45:33.824Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78832917420,
      "time": 158,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7329142006"
    },
    {
      "job": 78832917372,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329142716"
    },
    {
      "job": 78832917344,
      "time": 180,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7329322228"
    },
    {
      "job": 78832917451,
      "time": 157,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329435389"
    },
    {
      "job": 78832380705,
      "time": 214,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329090374"
    },
    {
      "job": 78832917325,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329127868"
    },
    {
      "job": 78832917341,
      "time": 112,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7329126922"
    },
    {
      "job": 78832917355,
      "time": 133,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7329133877"
    },
    {
      "job": 78832917419,
      "time": 128,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329132753"
    }
  ],
  "_buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/padrinodb/rpadrino",
  "_commit": {
    "id": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
    "author": "levisc8 <levisc8@users.noreply.github.com>",
    "committer": "levisc8 <levisc8@users.noreply.github.com>",
    "message": "update website\n",
    "time": 1695413244
  },
  "_maintainer": {
    "name": "Sam Levin",
    "email": "levisc8@gmail.com",
    "login": "levisc8",
    "twitter": "@SamLevin5",
    "description": "PhD student in the Knight Lab @ Uni-Halle + iDiv. Member of SalGo Team @ Oxford.  ",
    "uuid": 25177425,
    "orcid": "0000-0002-3289-9925"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "ipmr",
      "version": ">= 0.0.5",
      "role": "Depends"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 0.3.0",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "truncdist",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "maps",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "padrinodb",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "levisc8",
      "count": 192,
      "uuid": 25177425
    }
  ],
  "_userbio": {
    "uuid": 93520164,
    "type": "organization",
    "name": "PADRINO Database",
    "description": "Hosts the PADRINO database and associated software packages for interacting with it"
  },
  "_downloads": {
    "count": 187,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Rpadrino"
  },
  "_devurl": "https://github.com/padrinodb/rpadrino",
  "_pkgdown": "https://padrinoDB.github.io/Rpadrino/",
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/Rpadrino.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/padrinodb/rpadrino",
  "_realowner": "padrinodb",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2021-11-15"
    },
    {
      "version": "0.0.2",
      "date": "2021-11-16"
    },
    {
      "version": "0.0.3",
      "date": "2021-12-10"
    },
    {
      "version": "0.0.4",
      "date": "2022-04-30"
    },
    {
      "version": "0.0.5",
      "date": "2023-09-23"
    }
  ],
  "_exports": [
    ":=",
    ".data",
    "%>%",
    "as_label",
    "as_name",
    "enquo",
    "enquos",
    "expr",
    "pdb_altitude",
    "pdb_angio_gymon",
    "pdb_appendix_link",
    "pdb_authors",
    "pdb_citations",
    "pdb_class",
    "pdb_comments",
    "pdb_continent",
    "pdb_country",
    "pdb_dicot_monocot",
    "pdb_doi",
    "pdb_download",
    "pdb_duration",
    "pdb_ecoregion",
    "pdb_end_month",
    "pdb_end_year",
    "pdb_evict_type",
    "pdb_eviction_used",
    "pdb_family",
    "pdb_genus",
    "pdb_has_age",
    "pdb_has_time_lag",
    "pdb_journal",
    "pdb_kingdom",
    "pdb_lat",
    "pdb_load",
    "pdb_lon",
    "pdb_make_ipm",
    "pdb_make_proto_ipm",
    "pdb_new_fun_form",
    "pdb_number_populations",
    "pdb_order",
    "pdb_org_type",
    "pdb_periodicity",
    "pdb_phylum",
    "pdb_population_name",
    "pdb_pub_year",
    "pdb_report",
    "pdb_save",
    "pdb_species_accepted",
    "pdb_species_author",
    "pdb_start_month",
    "pdb_start_year",
    "pdb_studied_sex",
    "pdb_subset",
    "pdb_treatment",
    "sym",
    "syms"
  ],
  "_datasets": [
    {
      "name": "pdb",
      "title": "Selected models from the Padrino Database",
      "object": "pdb",
      "class": [
        "pdb",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "pdb",
      "title": "Selected models from the Padrino Database",
      "topics": [
        "pdb"
      ]
    },
    {
      "page": "metadata_utils",
      "title": "Access pieces of metadata from a 'pdb' object",
      "topics": [
        "pdb_altitude",
        "pdb_angio_gymon",
        "pdb_appendix_link",
        "pdb_authors",
        "pdb_citations",
        "pdb_class",
        "pdb_comments",
        "pdb_continent",
        "pdb_country",
        "pdb_dicot_monocot",
        "pdb_doi",
        "pdb_duration",
        "pdb_ecoregion",
        "pdb_end_month",
        "pdb_end_year",
        "pdb_eviction_used",
        "pdb_evict_type",
        "pdb_family",
        "pdb_genus",
        "pdb_has_age",
        "pdb_has_time_lag",
        "pdb_journal",
        "pdb_kingdom",
        "pdb_lat",
        "pdb_lon",
        "pdb_number_populations",
        "pdb_order",
        "pdb_org_type",
        "pdb_periodicity",
        "pdb_phylum",
        "pdb_population_name",
        "pdb_pub_year",
        "pdb_report",
        "pdb_species_accepted",
        "pdb_species_author",
        "pdb_start_month",
        "pdb_start_year",
        "pdb_studied_sex",
        "pdb_treatment"
      ]
    },
    {
      "page": "in_out",
      "title": "Download PADRINO 'pdb' objects",
      "topics": [
        "pdb_download",
        "pdb_load",
        "pdb_save"
      ]
    },
    {
      "page": "pdb_make_ipm",
      "title": "Generate IPMs from Padrino objects",
      "topics": [
        "pdb_make_ipm"
      ]
    },
    {
      "page": "pdb_make_proto_ipm",
      "title": "Generate proto_ipms from Padrino objects",
      "topics": [
        "pdb_make_proto_ipm"
      ]
    },
    {
      "page": "pdb_subset",
      "title": "Subset a Padrino database object",
      "topics": [
        "pdb_subset"
      ]
    },
    {
      "page": "print_star",
      "title": "Print a 'pdb' object.",
      "topics": [
        "print.pdb",
        "print.pdb_proto_ipm_list"
      ]
    },
    {
      "page": "ipmr_generics",
      "title": "Padrino methods for `ipmr` generic functions",
      "topics": [
        "conv_plot.pdb_ipm",
        "domains.pdb_ipm",
        "domains.pdb_proto_ipm_list",
        "int_mesh.pdb_ipm",
        "is_conv_to_asymptotic.pdb_ipm",
        "kernel_formulae.pdb_ipm",
        "kernel_formulae.pdb_proto_ipm_list",
        "kernel_formulae<-.pdb_proto_ipm_list",
        "lambda.pdb_ipm",
        "left_ev.pdb_ipm",
        "make_iter_kernel.pdb_ipm",
        "mean_kernel.pdb_ipm",
        "parameters.pdb_ipm",
        "parameters.pdb_proto_ipm_list",
        "parameters<-.pdb_proto_ipm_list",
        "pdb_new_fun_form",
        "pop_state.pdb_ipm",
        "pop_state.pdb_proto_ipm_list",
        "right_ev.pdb_ipm",
        "vital_rate_exprs.pdb_ipm",
        "vital_rate_exprs.pdb_proto_ipm_list",
        "vital_rate_exprs<-.pdb_proto_ipm_list",
        "vital_rate_funs.pdb_ipm",
        "[.pdb_ipm"
      ]
    }
  ],
  "_readme": "https://github.com/padrinodb/rpadrino/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "cpp11",
    "curl",
    "digest",
    "evaluate",
    "evd",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "ipmr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "mvtnorm",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "tinytex",
    "truncdist",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "data-cleaning.Rmd",
      "filename": "data-cleaning.html",
      "title": "Data Cleaning and Troubleshooting",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Fundamental operators",
        "Overview of the problem",
        "Diagnosis",
        "Fixing the problem"
      ],
      "created": "2021-10-26 11:53:59",
      "modified": "2021-11-08 12:47:18",
      "commits": 2
    },
    {
      "source": "pdb-msgs.Rmd",
      "filename": "pdb-msgs.html",
      "title": "Messages and Warnings in PADRINO",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Messages and warnings during proto_ipm construction from ipmr-level functions",
        "Messages and warnings during proto_ipm construction from Rpadrino-level functions",
        "Messages and warnings during IPM construction from ipmr-level functions",
        "Messages and warnings during IPM construction from Rpadrino-level functions"
      ],
      "created": "2022-04-28 16:27:03",
      "modified": "2022-04-28 17:24:14",
      "commits": 2
    },
    {
      "source": "stoch-ipms.rmd",
      "filename": "stoch-ipms.html",
      "title": "Modifying Stochastic IPMs in PADRINO",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Modifying the environment of a PADRINO IPM",
        "Finding parameter-resampled IPMs",
        "re-set environmental variables w/ pre-defined sequence of values",
        "Create the proto_ipm's and find the stochastic parameter names",
        "Create new stochastic parameter values",
        "Write our sampling function",
        "Remove the current environmental variation",
        "Insert our environmental variation",
        "Rebuild the models",
        "Modifying parameter values",
        "Identify parameter names",
        "Changing distributions",
        "Top-level function",
        "Substituting functions"
      ],
      "created": "2022-03-03 20:56:30",
      "modified": "2023-09-09 17:35:48",
      "commits": 2
    },
    {
      "source": "padrino-intro.Rmd",
      "filename": "padrino-intro.html",
      "title": "Rpadrino Introduction",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Package Overview",
        "Usage",
        "More complicated analyses",
        "The dataset",
        "Age-specific survival and fecundity",
        "Mean and variance in lifespan",
        "Correcting issues with data",
        "Quick solution",
        "Further reading"
      ],
      "created": "2019-01-13 16:00:23",
      "modified": "2023-09-09 17:35:48",
      "commits": 10
    }
  ],
  "_score": 4.954242509439325,
  "_indexed": true,
  "_nocasepkg": "rpadrino",
  "_universes": [
    "padrinodb",
    "levisc8"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.5",
      "date": "2026-06-01T10:28:33.000Z",
      "distro": "noble",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "b5f85e2cb58227f00a3faf2a926bf636348302b233a87dec1835c456f99ec936",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.5",
      "date": "2026-06-01T10:28:33.000Z",
      "distro": "noble",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "2f9289e7a50c048500f109aa716eaba0e759f9d4e4297d0bb78831f904666bd2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.5",
      "date": "2026-06-01T10:38:30.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "f33f3186e67bb4746866827cf3edac9b4eb6d948d6c3ecfcaafcc466bb117443",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.5",
      "date": "2026-06-01T10:44:26.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "1b685e3157f8e43e3bf64a7dc8f2d862dc21be04108f3db08d348cc06cca2e05",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.5",
      "date": "2026-06-01T10:28:31.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "19eeaca49663565976abbd77b3ac2c3ff334223c9eae595aad210af3e24786ff",
      "status": "success",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-06-01T10:27:38.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "b804a95e0fe2f2aa5841eca63e9e11833d1532695f023780f5e4a1b9416299df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-06-01T10:27:36.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "34ee06e2b3f651b7bfab045b82ed85f7b6ca20a0cd16886a8da397ba44a7ce8d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.5",
      "date": "2026-06-01T10:27:50.000Z",
      "commit": "2a9a784d89ba4046ce1eff873fcfcad5d6958a7e",
      "fileid": "d55c0e263edf0d9ad839c8dbf00c0d45a54bc75ab93e33e862a1fdb95c6ecdaa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/padrinodb/actions/runs/26749134360"
    }
  ]
}